tellurium

Model, simulate, and analyze biochemical systems
u
sing a single tool.

Announcement: Workshop: Building Large and Small Cellular Models Seattle 24/25 May 2016

New modeling text book (Systems Biology: Introduction to Pathway Modeling)

Tellurium was updated on May 16th 2016 to version 1.3.3 

   Download Windows version here

Run the installer and follow the instructions.

   Download for Mac OS X 10.10 or later

PLEASE READ THE INSTRUCTIONS ON INSTALLING THE MAC VERSION

Sourceforge site with all binary releases here.

Go to the News page for update details

tellurium1

Tellurium (te.) is a Python environment based on spyder2 IDE. It combines a number of existing libraries, including libSBMLlibRoadRunner (including libStruct), libAntimony, and is extensible via telPlugins. In addition other tools kits such as matplotlib and NumPy are used to provide additional analysis and plotting support. On Windows, Tellurium comes with pip, so you can easily pip install package whenever you need a third-party package.

Authors:

Jayit Biswas (Ratelaw database)
Kiri Choi (SEDML/COMBINE bindings, Spyder2 and Windows installer, Docs, Ratelaw database)
Wilbert Copeland (C API, Auto2000 debugging, refactoring libRoadrunner)
Caroline Cannistra (simpleSBML, libRoadRunner RK45, Docs)
Alex Darling (C API docs and testing)
Nasir Elmi (Stochastic test suite compliance)
Michal Galdzicki (Integrated suite, all-in-one installer, test suite);
Stanley Gu (SBML2Matlab and web interface);
Totte Karlsson (telPlugins, C# translation, C API, data fitting and bifurcation analysis);
Kong Matthias (SEDML, debugging, tutorial, libroadrunner, docs and Linux support)
Kyle Medley (Spyder2, Mac, libRoadRunner debugging and development, test suite, online build system, Docs, Network viewer)
Andy Somogyi (libRoadRunner Python API and C++ API, LLVM backend)
Lucian Smith (libAntimony, Python bindings, test suite)
Kaylene Stocking (Better plotting facilities, additional examples, Docs)
Herbert Sauro (PI, tellurium.py, Docs, testing)

Te. relies greatly on open source contributions from:
Frank Bergmann (libStruct, libSEDML);
Mike Hucka,  Sarah Keating (libSBML);
Pierre Raybaut (Spyder2, Winpython)
CVODE, NLEQ, Python, AUTO2000, LAPACK, LLVM, POCO

New contributions are always welcome.

The Tellurium and libRoadRunner project was funded from the NIH/NIGMS (GM081070).

All code is open source. Temporarily there is PyQt4 – GPL licensed code. Licences used include LGPL,  Apache 2, MIT, and New BDS.